{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Basic Example with Iris"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "import numpy as np\n",
    "from sklearn.datasets import load_iris \n",
    "iris = load_iris() \n",
    "X = iris.data.astype(np.float32) \n",
    "y_true = iris.target.astype(np.int32)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "from sklearn.preprocessing import OneHotEncoder\n",
    "\n",
    "y_onehot = OneHotEncoder().fit_transform(y_true.reshape(-1, 1))\n",
    "y_onehot = y_onehot.astype(np.int64).todense()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "dtype('int64')"
      ]
     },
     "execution_count": 4,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "y_onehot.dtype"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "matrix([[1, 0, 0],\n",
       "        [1, 0, 0],\n",
       "        [1, 0, 0],\n",
       "        [1, 0, 0],\n",
       "        [1, 0, 0]])"
      ]
     },
     "execution_count": 5,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "y_onehot[:5]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "from sklearn.model_selection import train_test_split\n",
    "X_train, X_test, y_train, y_test = train_test_split(X, y_onehot, random_state=14)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "input_layer_size, hidden_layer_size, output_layer_size = 4, 6, 3"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Using TensorFlow backend.\n"
     ]
    }
   ],
   "source": [
    "from keras.layers import Dense\n",
    "from keras.models import Sequential"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "hidden_layer = Dense(output_dim=hidden_layer_size, input_dim=input_layer_size, activation='relu')\n",
    "output_layer = Dense(output_layer_size, activation='sigmoid')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "#!pip install -U keras"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "model = Sequential(layers=[hidden_layer, output_layer])\n",
    "model.compile(loss='mean_squared_error', optimizer='adam', metrics=['accuracy'])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Epoch 1/10\n",
      "112/112 [==============================] - 0s - loss: 0.3581 - acc: 0.2946     \n",
      "Epoch 2/10\n",
      "112/112 [==============================] - 0s - loss: 0.3459 - acc: 0.2946     \n",
      "Epoch 3/10\n",
      "112/112 [==============================] - 0s - loss: 0.3354 - acc: 0.2946     \n",
      "Epoch 4/10\n",
      "112/112 [==============================] - 0s - loss: 0.3270 - acc: 0.2946     \n",
      "Epoch 5/10\n",
      "112/112 [==============================] - 0s - loss: 0.3194 - acc: 0.2946     \n",
      "Epoch 6/10\n",
      "112/112 [==============================] - 0s - loss: 0.3143 - acc: 0.3125     \n",
      "Epoch 7/10\n",
      "112/112 [==============================] - 0s - loss: 0.3102 - acc: 0.3214     \n",
      "Epoch 8/10\n",
      "112/112 [==============================] - 0s - loss: 0.3075 - acc: 0.3304     \n",
      "Epoch 9/10\n",
      "112/112 [==============================] - 0s - loss: 0.3054 - acc: 0.3750     \n",
      "Epoch 10/10\n",
      "112/112 [==============================] - 0s - loss: 0.3038 - acc: 0.4286     \n"
     ]
    }
   ],
   "source": [
    "history = model.fit(X_train, y_train)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
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       " 'loss': [0.35810074635914396,\n",
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     "execution_count": 13,
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     "output_type": "execute_result"
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   ],
   "source": [
    "history.history"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 14,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "%matplotlib inline"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 16,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
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    "import seaborn as sns\n",
    "from matplotlib import pyplot as plt\n",
    "\n",
    "plt.figure(figsize=(10, 10))\n",
    "plt.plot(history.epoch, history.history['loss'])\n",
    "plt.xlabel(\"Epoch\")\n",
    "plt.ylabel(\"Loss\")\n",
    "plt.savefig(\"keras_on_iris_one.png\")"
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  },
  {
   "cell_type": "code",
   "execution_count": 29,
   "metadata": {
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   "source": [
    "y_pred = model.predict(X_test)"
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  {
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   "execution_count": 30,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "\r",
      "32/38 [========================>.....] - ETA: 0s"
     ]
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   ],
   "source": [
    "y_pred = model.predict_classes(X_test)"
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  {
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   "metadata": {
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   "outputs": [
    {
     "data": {
      "text/plain": [
       "array([2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,\n",
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  {
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   "metadata": {
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     "name": "stdout",
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     "text": [
      "             precision    recall  f1-score   support\n",
      "\n",
      "          0       0.00      0.00      0.00        17\n",
      "          1       0.00      0.00      0.00        13\n",
      "          2       0.21      1.00      0.35         8\n",
      "\n",
      "avg / total       0.04      0.21      0.07        38\n",
      "\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/home/robert/Programs/anaconda3/lib/python3.5/site-packages/sklearn/metrics/classification.py:1113: UndefinedMetricWarning: Precision and F-score are ill-defined and being set to 0.0 in labels with no predicted samples.\n",
      "  'precision', 'predicted', average, warn_for)\n"
     ]
    }
   ],
   "source": [
    "from sklearn.metrics import classification_report\n",
    "y_pred = model.predict_classes(X_test)\n",
    "print(classification_report(y_true=y_test.argmax(axis=1), y_pred=y_pred))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 35,
   "metadata": {
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   "source": [
    "hidden_layer = Dense(output_dim=hidden_layer_size, input_dim=input_layer_size, activation='relu')\n",
    "output_layer = Dense(output_layer_size, activation='sigmoid')\n",
    "\n",
    "model = Sequential(layers=[hidden_layer, output_layer])\n",
    "model.compile(loss='mean_squared_error', optimizer='adam', metrics=['accuracy'])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 17,
   "metadata": {
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   "source": [
    "history = model.fit(X_train, y_train, nb_epoch=1000, verbose=False)"
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     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "import seaborn as sns\n",
    "from matplotlib import pyplot as plt\n",
    "\n",
    "plt.figure(figsize=(12, 8))\n",
    "plt.plot(history.epoch, history.history['loss'])\n",
    "plt.xlabel(\"Epoch\")\n",
    "plt.ylabel(\"Loss\")\n",
    "plt.savefig(\"keras_on_iris_2.png\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 38,
   "metadata": {
    "collapsed": false
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "32/38 [========================>.....] - ETA: 0s             precision    recall  f1-score   support\n",
      "\n",
      "          0       1.00      1.00      1.00        17\n",
      "          1       1.00      1.00      1.00        13\n",
      "          2       1.00      1.00      1.00         8\n",
      "\n",
      "avg / total       1.00      1.00      1.00        38\n",
      "\n"
     ]
    }
   ],
   "source": [
    "y_pred = model.predict_classes(X_test)\n",
    "print(classification_report(y_true=y_test.argmax(axis=1), y_pred=y_pred))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
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   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
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